Python API

THAPBI Phytophthora ITS1 Classifier Tool (PICT).

You would typically use THAPBI PICT via the command line tool it defines:

$ thapbi_pict --help
...

However, it is also possible to call functions etc from within Python. The top level package currently only defines the tool version:

>>> from thapbi_pict import __version__
>>> print(__version__)
...

The tool documentation is hosted by Read The Docs, generated automatically from the docs/ folder of the software repository and the “docstrings” within the source code which document the Python API.

• thapbi_pict.assess module
• thapbi_pict.classify module
• thapbi_pict.conflicts module
• thapbi_pict.db_import module
• thapbi_pict.db_orm module
• thapbi_pict.dump module
• thapbi_pict.edit_graph module
• thapbi_pict.fasta_nr module
• thapbi_pict.sample_tally module
• thapbi_pict.prepare module
• thapbi_pict.summary module
• thapbi_pict.taxdump module
• thapbi_pict.utils module
• thapbi_pict.ena_submit module
• thapbi_pict.versions module